siRNA Scan
Enter your sequences in
FASTA
format:
Specify the following parameters for siRNA
:
Length of siRNA (nt):
18
19
20
21
22
23
24
25
26
27
28
29
The 5' terminal base of antisense strand is A or U
Minimum A/U bp in 7 terminal bases of antisense
3
4
5
The 5' terminal base of sense strand is G or C
GC content (%):
from
to
Avoid 4 or more Gs or Cs in a row:
Avoid 9 G/C in a row:
Mismatch allowed in BLAST search:
Specify dataset:
---------------Genome---------------
Arabidopsis thaliana mRNA (from TIGR Ath1 5)
Rice Genome cDNA genome v4 release on Jan 13 2006
Viruses (GenBank RefSeq Viral1)
Human Genome mRNA genome v0 release on Aug 16 2010
Mouse Genome mRNA genome v0 release on Aug 16 2010
Drosophila melanogaster genome mRNA release genome v5.6 release on Mar 10 2008
C. elegans confirmed genes genome v142 release on May 8 2005
---------------UniGene Plant---------------
Arabidopsis tgi v12.1 release on 10/8/2004
Barley tgi v9 release on 9/15/2004
Brassica napus tgi v1 release on 9/29/2004
C. reinhardtii tgi v5 release on 9/28/2004
Cocoa tgi v1 release on 5/20/2004
Cotton tgi v8 release on 04/11/06
Grape tgi v4 release on 9/21/2004
Iceplant tgi v4 release on 4/23/2003
Lettuce tgi v2 release on 1/12/2004
Lotus tgi v3 release on 6/29/2004
Maize tgi v16 release on 10/12/05
M. truncatula tgi v8 release on 1/19/2005
N. benthamiana tgi v2 release on 11/9/2004
Onion tgi v1 release on 9/4/2003
Pepper tgi v2 release on 11/9/2004
Petunia tgi v1 release on 9/29/2004
Pinus tgi v6 release on 07/27/05
Poplar tgi v1 release on 9/27/2004
Potato tgi v10 release on 11/9/2004
Rice tgi v16 release on 9/18/2004
Rye tgi v3 release on 12/22/2003
Sorghum bicolor tgi v8 release on 5/11/2004
Soybean tgi v12 release on 9/20/2004
Spruce tgi v1 release on 9/24/2004
Sugarcane tgi v2.1 release on 10/14/04
Sunflower tgi v3 release on 8/18/2003
Tobacco tgi v2 release on 11/8/2004
Tomato tgi v10.1 release on 10/29/04
Tomato sgn v1 release on 07/2006
Wheat tgi v10 release on 1/14/2005
---------------UniGene Animal---------------
Astatotilapia burtoni tgi v1 release on 5/20/2004
Amblyomma variegatum tgi v1 release on 6/10/2002
Aedes aegypti tgi v4 release on 08/26/04
Atlantic salmon tgi v2.1 release on 06/29/04
Brugia malayi tgi v5 release on 01/28/05
Catfish tgi v6 release on 02/14/05
Cattle tgi v11 release on 10/05/04
Caenorhabditis elegans tgi v9 release on 10/06/04
Dog tgi v6 release on 02/11/05
Chicken tgi v10 release on 02/15/05
Ciona intestinalis tgi v4 release on 10/04/04
Drosophila tgi v10 release on 10/04/04
Fugu tgi v1 release on 5/12/2004
Haplochromis chilotes tgi v1 release on 5/20/2004
Haplochromis sp. red tail sheller tgi v1 release on 5/20/2004
Honey bee tgi v4 release on 5/4/2004
Human tgi v16 release on 02/25/05
Mosquito tgi v8 release on 02/10/05
Mouse tgi v15 release on 02/25/05
Oryzias latipes tgi v5 release on 5/17/2004
Onchocerca volvulus tgi v4 release on 01/28/05
Pig tgi v11 release on 02/11/05
Rat tgi v13 release on 10/05/04
Rhipicephalus appendiculatus tgi v1 release on 12/12/2003
Rainbow Trout tgi v4 release on 5/17/2004
Schistosoma mansoni tgi v5 release on 11/7/2003
Frog (Xenopus laevis) tgi v8 release on 5/12/2004
Zebrafish tgi v16 release on 10/05/04
-----------------------------------------
All viral nt sequences from GenBank(as of 5/4/2004)
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your feedback!
Update: 08/20/2010